bin_PROGRAMS=indexg_2nd indexg_gc indexg_rep
#bin_PROGRAMS=indexg_rep
indexg_2nd_SOURCES=indexg_2nd.c common.h indexg.1 fastaIO.c fastaIO.h taostr.h taostr.c xmalloc.c system.h aclocal.m4 getopt.c getopt1.c getopt.h
indexg_gc_SOURCES=indexg_gc.c common.h indexg.1 fastaIO.c fastaIO.h taostr.h taostr.c xmalloc.c system.h aclocal.m4 getopt.c getopt1.c getopt.h
indexg_rep_SOURCES=indexg_rep.c indexg_rep.h common.h indexg.1 fastaIO.c fastaIO.h taostr.h taostr.c xmalloc.c system.h aclocal.m4 getopt.c getopt1.c getopt.h

#  uncomment the following if indexg requires the math library
indexg_2nd_LDADD=-LViennaRNA/lib -lRNA -lm
indexg_gc_LDADD=-lm
indexg_rep_LDADD=-lm

AM_CFLAGS = -IViennaRNA/H  $(all_includes)
#AC_CONFIG_FILES = Makefile ViennaRNA/Makefile

EXTRA_DIST=indexg.lsm.in indexg.spec.in indexg.texinfo

# subdirs
SUBDIRS = ViennaRNA

#  if you write a self-test script named `chk', uncomment the
#  following and add `chk' to the EXTRA_DIST list
#TESTS=chk

#  build and install the .info pages
info_TEXINFOS = indexg.texinfo
indexg_TEXINFOS = gpl.texinfo

#  install the man pages
man_MANS=indexg.1
